Frontiers generation and characterization of a foxtail. Setaria italica coarse droughtresistant annual grass grown for grain, hay, and forage in europe and asia and chiefly for forage and hay in united. Phytolithic analysis provides a meaningful method for identifying this important crop. Rhizosheath formation and involvement in foxtail millet setaria italica. Genetics and genomics of setaria andrew doust springer. View enhanced pdf access article on wiley online library html view download pdf for offline viewing. Flora category vascular exotic structural class grasses nvs code. An efficient agrobacterium mediated genetic transformation. Files are available under licenses specified on their description page. It is the secondmost widely planted species of millet, and the most grown millet species in asia.
Setaria italica foxtail millet is a grain crop widely grown in asia with particular significance in semiarid regions of northern china. Rhizosheath formation and involvement in foxtail millet. Setaria italica definition of setaria italica by the free. Foxtail millet is distributed in natural and agricultural ecosystems worldwide, and it is grown as a cereal crop for both human food and fodder bettinger et al. Dhns in setaria italica and zea mays, but 6 in sorghum bicolor. Rhizosheath formation and involvement in foxtail millet setaria italica root growth under drought stress tie. Return to article details agromorphological characterisation of foxtail millet setaria italica l. Instabilite chromosomique dans les tissus somatiques des descendants dun hybride interspecifique setaria verticillata p. Consultative group on international agricultural research cgiar, research.
Foxtail millet setaria italica is attractive to plant scientists as a model plant because of several distinct characteristics, such as its short stature, rapid life cycle, sufficient seed production per plant, selfcompatibility, true diploid nature, high photosynthetic efficiency, small genome size, and tolerance to abiotic and biotic stress. Alagarasan g, dubey m, aswathy ks and chandel g 2017 genome wide identification of orthologous zip genes associated with zinc and iron translocation in. All structured data from the file and property namespaces is available under the creative commons cc0 license. Setaria italica and its wild ancestor setaria viridis are diploid c 4 grasses with small genomes of. In this study, the transcriptome of foxtail millet under lownitrogen stress was systematically analyzed. Setaria italica common name foxtail millet family poaceae authority setaria italica l. Potential hypoglycaemic effects of insoluble fibres isolated. Setaria italica definition of setaria italica by the. Foxtail millet setaria italica, a member of the poaceae grass family, is an important food and fodder crop in arid regions and has potential for use as a c 4 biofuel. During maturation of the plants, substantial nitrogenase activity, measured by. A the quick search page for gene information, metabolic pathways, and ortholog transformation. Setaria italica foxtail millet is a model species for panacoid. Typical examples of these taxa can be distinguished on the basis that s.
Yuan liu school of life sciences and state key laboratory of agrobiotechnology, the chinese university of hong kong, hong kong, china. The narrow genetic basis of these two gene pools may be the result of localadaptation. Smithsonian institution, hosted by the usdanrcs plants database. Foxtail millet setaria italica is a small diploid c4 panicoid crop species, whose genome is being sequenced by the joint genome institute jgi of the department of energy. Beauv at rampur, chitwan, nepal download download pdf. As part of the systems approach, we have developed and used a genomescale metabolic reconstruction in combination with the use of multiomics technologies to gain more insights into the metabolism of. Identifying these two millets in the archaeobotanical remains are still problematic, especially because the millet grains preserve only when charred.
The point of disarticulation below the glumes in s. Recent advances in sequencing technologies are transforming the field of plant science wang et al. The new york flora atlas is a source of information for the distribution of plants within the state, as well as information on plant habitats, associated ecological communities, and taxonomy. Ang setaria italica sakop sa kahenera nga setaria sa kabanay nga poaceae. Setaria viridis and setaria italica, model genetic systems. In vitro regeneration of foxtail millet setaria italica l. Setaria viridis green foxtail is one of the worlds most. Oct 16, 2012 potential hypoglycaemic effects of insoluble fibres isolated from foxtail millets setaria italica l. Expression of 1891 genes was altered, including 18 upregulated genes and 573 down.
Ornamental millet grass is lovely in the mixed border where the rich, reddishbrown foliage and brown, pendulous seed heads give a stunning display. However, the mechanism of foxtail millet tolerance to lownitrogen stress is still unknown. Droughttolerance mechanisms in foxtail millet setaria italica and. According to archeological evidence, foxtail millet was domesticated from green foxtail approximately 9,000 to 6,000 ybp in china. Genome wide identification of orthologous zip genes. Rather than decades, it will soon be possible to obtain draft genome sequences in a matter of months or weeks eid et al. Chromosomal instability in the somatic tissues of descendants of an interspecific hybrid of setaria verticillata s. Download plants data complete plants checklist state plants checklist. Setaria, a member of the grass subfamily panicoideae, tribe paniceae is closely related to other paniceae, including switchgrass, proso. Early identification of salt tolerant foxtail millet setaria italica l. Both species have attributes that make them attractive as model systems. Foxtail millet setaria italica is a member of the poaceae grasses that was initially domesticated from the wild species of s. Reference genome sequence of the model plant setaria nature. Phytolith analysis for differentiating between foxtail.
Jan 14, 2020 a simple and robust agrobacteriummediated gene expression system in the c4 panicoid model crop, foxtail millet has been developed with up to 27 % transformation efficiency. In addition, users can learn about the location of vouchered specimens and see images to get a better visual for each plant. Silicon deposition in the inflorescence bristles and. Setaria italica seeds red jewel millet ornamental grass seed. Generation and characterization of a foxtail millet setaria. Isozyme analysis of genetic diversity and population genetic structure in setaria viridis. Italian millet, italian foxtail, german millet, siberian millet, foxtail bristlegrass, foxtailmillet. Media in category setaria italicathe following 31 files are in this category, out of 31 total.
The rationale for sequencing foxtail millet is that it is closely related to the bioenergy grasses switchgrass panicum. Its short stature, simple growth requirements, and rapid life cycle will greatly facilitate genetic studies of the c4 grasses. Genomewide characterization of microrna in foxtail millet setaria italica. Pagka karon wala pay siak nga nalista ubos niini niya. Poaceae update for itis, in cooperation with natureserve, and based on the catalogue of new world grasses database and other sources. Setaria viridis is a member of the panicoideae clade and is a close relative of several major feed, fuel, and bioenergy grasses. View of agromorphological characterisation of foxtail millet setaria. Phosphorus p is an essential element which plays several key roles in all living organisms. Pdf genomewide characterization of microrna in foxtail.
An efficient and improved transformation method for functional genetics studies in s. High concentrations of silicon were detected in the prickle hairs which covered the bristles. Silicon deposits in the inflorescence bristles subtending each spikelet, and in the macrohairs of foxtail millet setaria italica l. Structure of the setaria italica functional genome database. Flora category vascular exotic structural class grasses nvs code setita conservation status not assessed year naturalised 1870 origin unknown but. A taxonomic species within the family poaceae foxtail millet, a common food grain, probably originating in southern china. Setaria italica synonyms, setaria italica pronunciation, setaria italica translation, english dictionary definition of setaria italica. A cluster analysis of 2907 accessions of foxtail millet setaria italica l. An improved protocol for efficient transformation and. The naclike transcription factor sinac110 in foxtail millet setaria. Compared to other gramineous crops, it has relatively stronger drought and lower.
Foxtail millet setaria italica is a short life cycle c4 plant, with sequenced genome, and a potential model plant for c4 species. Potential hypoglycaemic effects of insoluble fibres isolated from foxtail millets setaria italica l. Phytoliths analysis provides a viable method for identifying this important crop. Mar 25, 2020 setaria italica f a taxonomic species within the family poaceae foxtail millet, a common food grain, probably originating in southern china.
Foxtail millet setaria italica and common millet panicum miliaceum are the oldest domesticated dry farming crops in eurasia. In countries with an arid or semiarid climate, millet is a staple crop of significant economic importance, taking the place of wheat and corn. Genomewide in silico analysis of dehydrins in sorghum. Oldest evidence of foxtail millet is found along the ancient course of yellow river in cishan, china, carbon dated to be 8700 bc. Bailey classification click on a scientific name below to expand it in the plants classification report. Setaria, a member of the grass subfamily panicoideae, tribe paniceae is closely related to other paniceae, including switchgrass, proso millet and pearl millet 16,17,18. Media in category setaria italica the following 31 files are in this category, out of 31 total. Setaria is a widespread genus of plants in the grass family the name is derived from the latin word seta, meaning bristle or hair, which refers to the bristly spikelets the genus includes over 100 species distributed in many tropical and temperate regions around the world, and members are commonly known as foxtail or bristle grasses.
A simple and robust agrobacteriummediated gene expression system in the c4 panicoid model crop, foxtail millet has been developed with up to 27 % transformation efficiency. Assessment of genetic relationships between setaria italica and its. Setaria italica is a grain crop widely grown in northern china and india that is closely related to the major food and feed crops maize and sorghum. Pdf setaria viridis and setaria italica, model genetic. Thus, the availability of genome sequence soon will not be a limiting factor in developing. Plants profile for setaria italica foxtail millet usda. Foxtail millet setaria italica, which originated in china, has a strong tolerance to low nutrition stresses.
Domestication and improvement in the model c4 grass, setaria. Sintho wahyuning ardiea, nurul khumaidaa, amin nurb, nurul fauziaha. Flora category vascular exotic structural class grasses nvs code setita conservation status not assessed year naturalised 1870 origin unknown but probably derived from european s. Reference genome sequence of the model plant setaria.
Genomewide in silico analysis of dehydrins in sorghum bicolor, setaria italica and zea mays and quantitative analysis of dehydrin gene expressions under abiotic stresses in sorghum bicolor. Potential hypoglycaemic effects of insoluble fibres. The plants were fertilized at seeding with a limiting amount of combined nitrogen and maintained with an nfree mineral solution. Foxtail millet setaria italica is one of the oldest domesticated cereal crops in eurasia, but identifying foxtail millets, especially in charred grains, and differentiating it from its wild ancestor, green foxtail setaria viridis, in the archaeobotanical remains, is still problematic.
B the motif analysis page for motif scans and signi. Setaria viridis green foxtail and its domesticated relative s. May, 2012 foxtail millet setaria italica, a member of the poaceae grass family, is an important food and fodder crop in arid regions and has potential for use as a c 4 biofuel. In tropical and subtropical rain forests, tropical and subtropical wet sclerophyll forests, dry. Advances in molecular genetics and genomics had identified several potential genes in this. Growth and nitrogen fixation were followed during the life cycle of setaria italica foxtail millet inoculated with azospirillum brasilense in controlledenvironment growth chambers. The results can also be downloaded as a csv file unicode utf8 encoding see status, confidence level, source for. It is one of the oldest domesticated crops with archeological remains from 5,500 to 5,900 years bc in northern china. This grass foxtail millet has been cultivated as a cereal in china since ancient times and exists in many races differing in size, shape, and hairiness of the panicle, color of the grain, and length of the bristles.
Dinitroaniline herbicide crossresistance in resistant setaria italica lines selected from interspecific cross with s. Cluster analysis of an international collection of foxtail millet. Foxtail millet, scientific name setaria italica synonym panicum italicum l. Phytoliths analysis for the discrimination of foxtail. The structure of sifgd displays the main contents of the database. In countries with an arid or semiarid climate, millet is a staple crop of. Holecross test, ethanolic extracts of setaria italica at 400 mgkg body weight dose have prominent cns depressant activity which is. It is also grown on a moderate scale in other parts of the world as a forage crop. Insoluble fibres were isolated from the two varieties of foxtail millet white and. Setaria is a widespread genus of plants in the grass family. It is a true diploid with a relatively small genome of 510 mb. Millet is a true grass or cereal, just like wheat, maize and rice, and a great source of essential nutrients. Setaria italica setaria italica red jewel commonly known as foxtail millet or red bristle grass, this annual millet can be grown from setaria italica seeds, and it will make a stunning addition to the home landscape. Setaria viridis green foxtail is one of the worlds most widespread weeds, and its small size, native variation.